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The paleogeosciences are becoming more and more interdisciplinary, and studies increasingly rely on large collections of data derived from multiple data repositories. Integrating diverse datasets from multiple sources into complex workflows increases the challenge of creating reproducible and open science, as data formats and tools are often noninteroperable, requiring manual manipulation of data into standardized formats, resulting in a disconnect in data provenance and confounding reproducibility. Here we present a notebook that demonstrates how the Linked PaleoData (LiPD) framework is used as an interchange format to allow data from multiple data sources to be integrated in a complex workflow using emerging packages in R for geochronological uncertainty quantification and abrupt change detection. Specifically, in this notebook, we use the neotoma2 and lipdR packages to access paleoecological data from the Neotoma Database, and paleoclimate data from compilations hosted on Lipdverse. Age uncertainties for datasets from both sources are then quantified using the geoChronR package, and those data, and their associated age uncertainties, are then investigated for abrupt changes using the actR package, with accompanying visualizations. The result is an integrated, reproducible workflow in R that demonstrates how this complex series of multisource data integration, analysis and visualization can be integrated into an efficient, open scientific narrative. 

Quantitative temperature reconstructions from lacustrine organic geochemical proxies including branched glycerol dialkyl glycerol tetraethers (brGDGTs) and alkenones provide key constraints on past continental climates. However, estimation of air temperatures from proxies can be impacted by non‐stationarity in the relationships between seasonal air and water temperatures, a factor not yet examined in strongly seasonal high‐latitude settings. We pair downcore analyses of brGDGTs and alkenones measured on the same samples through the Holocene with forward‐modeled proxy values based on thermodynamic lake model simulations for a western Greenland lake. The measured brGDGT distributions suggest that stable autochthonous (aquatic) production overpowers allochthonous inputs for most samples, justifying the use of the lake model to interpret temperature‐driven changes. Conventional calibration of alkenones (detected only after 5.5 thousand years BP) suggests substantially larger temperature variations than conventional calibration of brGDGTs. Comparison of proxy measurements to forward‐modeled values suggests variations in brGDGT distributions monotonically reflect multi‐decadal summer air temperatures changes, although the length of the ice‐free season dampens the influence of air temperatures on water temperatures. Drivers of alkenone variability remain less clear; potential influences include small changes in the seasonality of proxy production or biases toward specific years, both underlain by non‐linearity in water‐air temperature sensitivity during relevant seasonal windows. We demonstrate that implied temperature variability can differ substantially between proxies because of differences in air‐water temperature sensitivity during windows of proxy synthesis without necessitating threshold behavior in the lake or local climate, and recommend that future studies incorporate lake modeling to constrain this uncertainty.

 

Stable oxygen isotopic ratios in corals (δ¹⁸O_coral) are commonly utilized to reconstruct climate variability beyond the limit of instrumental observations. These measurements provide constraints on past seawater temperature, due to the thermodynamics of isotopic fractionation, but also past salinity, as both salinity and seawater δ¹⁸O (δ¹⁸O_sw) are similarly affected by precipitation/evaporation, advection, and other processes. We use historical observations, isotope‐enabled model simulations, and the PAGES Iso2k database to assess the potential of δ¹⁸O_coralto provide information on past salinity. Using ‘‘pseudocorals’’ to represent δ¹⁸O_coralas a function of observed or simulated temperature and salinity/δ¹⁸O_sw, we find that δ¹⁸O_swcontributes up to 89% of δ¹⁸O_coralvariability in the Western Pacific Warm Pool. Although uncertainty in the δ¹⁸O_sw‐salinity relationship influences the inferred salinity variability, corals from these sites could provide valuable δ¹⁸O_swreconstructions. Coordinated in situ monitoring of salinity and δ¹⁸O_swis vital for improving estimates of hydroclimatic change.